#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrX.interval_list -i HGDP/HGDP01162/HGDP01162.cram --algo WgsMetricsAlgo --min_map_qual 0 HGDP/HGDP01162/QCmetrics/HGDP01162.WgsMetrics.chrX.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 152114341 27.434 7.5499 27 4 0 0.080289 0.0037401 0.053799 0.00157 0.00025962 0.13966 0.99866 0.99559 0.98979 0.97375 0.89998 0.67862 0.3585 0.032676 0.0045361 0.0023196 0.0014123 0.00092806 0.00066317 0.00050344 0.99717 25 coverage high_quality_coverage_count 0 203118 1 125586 2 108747 3 111840 4 122266 5 135262 6 151699 7 170819 8 194780 9 228891 10 277322 11 342315 12 436860 13 584189 14 799625 15 1109023 16 1535130 17 2100648 18 2809980 19 3666960 20 4650472 21 5706550 22 6784025 23 7814183 24 8716077 25 9423224 26 9862754 27 10031007 28 9897040 29 9481259 30 8845306 31 8030121 32 7117443 33 6150671 34 5195632 35 4290450 36 3459898 37 2734579 38 2122950 39 1615213 40 1207801 41 892688 42 651210 43 471054 44 338386 45 243353 46 175864 47 128642 48 97215 49 74211 50 59207 51 49041 52 41294 53 35596 54 31534 55 28557 56 25889 57 23902 58 22026 59 20111 60 18573 61 17164 62 16114 63 14789 64 13929 65 12889 66 12063 67 11452 68 10808 69 10230 70 9531 71 9003 72 8392 73 8109 74 7460 75 6994 76 6646 77 6178 78 5836 79 5515 80 5097 81 4783 82 4489 83 4205 84 4163 85 3885 86 3751 87 3352 88 3393 89 3176 90 3042 91 2890 92 2705 93 2628 94 2463 95 2387 96 2235 97 2132 98 1981 99 1834 100 1865 101 1762 102 1657 103 1598 104 1541 105 1412 106 1424 107 1383 108 1253 109 1188 110 1289 111 1183 112 1143 113 1107 114 977 115 1058 116 1006 117 975 118 901 119 893 120 915 121 830 122 753 123 805 124 755 125 690 126 696 127 732 128 723 129 687 130 702 131 648 132 684 133 641 134 627 135 578 136 604 137 620 138 605 139 590 140 539 141 536 142 511 143 511 144 527 145 491 146 447 147 456 148 470 149 419 150 407 151 456 152 446 153 465 154 426 155 458 156 434 157 427 158 434 159 362 160 401 161 408 162 355 163 340 164 344 165 306 166 296 167 306 168 291 169 303 170 275 171 311 172 277 173 300 174 294 175 269 176 263 177 275 178 271 179 270 180 279 181 284 182 257 183 258 184 267 185 272 186 246 187 272 188 236 189 204 190 224 191 236 192 212 193 207 194 185 195 177 196 223 197 211 198 185 199 194 200 194 201 179 202 193 203 155 204 184 205 188 206 214 207 203 208 186 209 172 210 187 211 185 212 176 213 187 214 210 215 199 216 175 217 196 218 150 219 168 220 157 221 179 222 137 223 154 224 147 225 143 226 163 227 150 228 150 229 141 230 119 231 128 232 129 233 130 234 143 235 122 236 121 237 122 238 103 239 109 240 92 241 115 242 118 243 95 244 102 245 92 246 82 247 115 248 82 249 107 250 9626