#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01166/HGDP01166.cram --algo AlignmentStat HGDP/HGDP01166/QCmetrics/HGDP01166.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	439486486	439486486	1.000000	0	437830423	0.996232	65252636749	409611740	61355909895	59417925062	0.000000	0.005883	0.005139	0.000224	151.000000	435631680	0.994978	0	0.500004	0.021127	0.000003	
SECOND_OF_PAIR	439486486	439486486	1.000000	0	435678890	0.991336	63285570200	406437579	59617240564	54603913280	1.000000	0.013164	0.012436	0.000211	151.000000	435631680	0.999892	0	0.499402	0.023064	0.000528	
PAIR	878972972	878972972	1.000000	0	873509313	0.993784	128538206949	816049319	120973150459	114021838342	0.000000	0.009468	0.008735	0.000218	151.000000	871263360	0.997429	0	0.499704	0.022093	0.000266