#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01167/HGDP01167.cram --algo AlignmentStat HGDP/HGDP01167/QCmetrics/HGDP01167.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	416413190	416413190	1.000000	0	414904529	0.996377	61958927801	387602887	58179610840	56484377401	0.000000	0.005913	0.005139	0.000222	151.000000	412851340	0.995051	0	0.500001	0.020868	0.000002	
SECOND_OF_PAIR	416413190	416413190	1.000000	0	412898491	0.991560	60191829558	384681701	56625050062	52048366317	1.000000	0.013212	0.012448	0.000209	151.000000	412851340	0.999886	0	0.499425	0.022395	0.000428	
PAIR	832826380	832826380	1.000000	0	827803020	0.993968	122150757359	772284588	114804660902	108532743718	0.000000	0.009509	0.008743	0.000215	151.000000	825702680	0.997463	0	0.499713	0.021630	0.000215