#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01169/HGDP01169.cram --algo AlignmentStat HGDP/HGDP01169/QCmetrics/HGDP01169.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	449225710	449225710	1.000000	0	448362132	0.998078	66997706248	420749475	63186996878	61578100397	0.000000	0.005210	0.004535	0.000219	151.000000	446788899	0.996491	0	0.500096	0.019565	0.000002	
SECOND_OF_PAIR	449225710	449225710	1.000000	0	446825916	0.994658	65323330761	418255186	61730631185	57084478806	0.000000	0.012099	0.011428	0.000205	151.000000	446788899	0.999917	0	0.499471	0.021336	0.000650	
PAIR	898451420	898451420	1.000000	0	895188048	0.996368	132321037009	839004661	124917628063	118662579203	0.000000	0.008611	0.007941	0.000212	151.000000	893577798	0.998201	0	0.499784	0.020449	0.000326