#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01174/HGDP01174.cram --algo AlignmentStat HGDP/HGDP01174/QCmetrics/HGDP01174.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	420983845	420983845	1.000000	0	419077892	0.995473	62603272850	391098477	58737013825	57128919053	0.000000	0.005583	0.004808	0.000222	151.000000	417583653	0.996434	0	0.500053	0.020983	0.000004	
SECOND_OF_PAIR	420983845	420983845	1.000000	0	417638105	0.992053	60935884704	388748337	57297383282	52460018181	1.000000	0.013251	0.012491	0.000208	151.000000	417583653	0.999870	0	0.499402	0.022330	0.002762	
PAIR	841967690	841967690	1.000000	0	836715997	0.993763	123539157554	779846814	116034397107	109588937234	0.000000	0.009365	0.008602	0.000215	151.000000	835167306	0.998149	0	0.499728	0.021656	0.001383