#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01182/HGDP01182.cram --algo AlignmentStat HGDP/HGDP01182/QCmetrics/HGDP01182.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	461051807	461051807	1.000000	0	460823698	0.999505	68833596149	431815563	64812894464	63546040660	0.000000	0.004669	0.003983	0.000224	151.000000	459533692	0.997201	0	0.500000	0.019947	0.000001	
SECOND_OF_PAIR	461051807	461051807	1.000000	0	459568635	0.996783	67589765735	429724183	63738306224	60375882346	0.000000	0.009395	0.008665	0.000215	151.000000	459533692	0.999924	0	0.499502	0.022740	0.000233	
PAIR	922103614	922103614	1.000000	0	920392333	0.998144	136423361884	861539746	128551200688	123921923006	0.000000	0.007011	0.006304	0.000219	151.000000	919067384	0.998560	0	0.499751	0.021342	0.000117