#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01183/HGDP01183.cram --algo AlignmentStat HGDP/HGDP01183/QCmetrics/HGDP01183.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	436834801	436834801	1.000000	0	436513090	0.999264	65241287153	406910041	61149197273	60101626437	0.000000	0.004546	0.003766	0.000225	151.000000	435274825	0.997163	0	0.499874	0.020325	0.000002	
SECOND_OF_PAIR	436834801	436834801	1.000000	0	435309400	0.996508	64101863720	404940080	60199521505	57239034046	0.000000	0.009323	0.008493	0.000215	151.000000	435274825	0.999921	0	0.499575	0.021872	0.000504	
PAIR	873669602	873669602	1.000000	0	871822490	0.997886	129343150873	811850121	121348718778	117340660483	0.000000	0.006913	0.006111	0.000220	151.000000	870549650	0.998540	0	0.499725	0.021098	0.000253