#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrY.interval_list -i HGDP/HGDP01183/HGDP01183.cram --algo WgsMetricsAlgo --min_map_qual 0 HGDP/HGDP01183/QCmetrics/HGDP01183.WgsMetrics.chrY.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 23636355 18.854 25.752 15 3 0 0.138 0.0014067 0.048387 0.010495 0.39644 0.59474 0.99806 0.98234 0.86553 0.53315 0.19303 0.069198 0.046015 0.037479 0.033184 0.029464 0.025602 0.021625 0.018246 0.015827 0.98482 18 coverage high_quality_coverage_count 0 45775 1 46485 2 63330 3 100538 4 161205 5 248474 6 368533 7 520962 8 705401 9 917754 10 1151058 11 1391323 12 1620688 13 1798617 14 1894441 15 1904667 16 1820830 17 1663109 18 1447542 19 1203067 20 958959 21 738889 22 548768 23 398008 24 282342 25 196074 26 136496 27 96908 28 68415 29 50078 30 37683 31 29831 32 23992 33 20981 34 18340 35 16678 36 15130 37 13819 38 12958 39 12341 40 11674 41 10973 42 10852 43 10700 44 10117 45 9550 46 9565 47 9401 48 9389 49 9296 50 9411 51 9239 52 9149 53 8878 54 8774 55 8530 56 8307 57 8500 58 8593 59 8557 60 8748 61 9093 62 8985 63 8995 64 8974 65 9180 66 9104 67 9289 68 9430 69 9472 70 9333 71 9558 72 9486 73 9466 74 9619 75 9545 76 9375 77 9305 78 9082 79 9238 80 8811 81 8618 82 8555 83 8327 84 8032 85 7968 86 7750 87 7377 88 7329 89 7103 90 6728 91 6643 92 6261 93 6132 94 5786 95 5507 96 5322 97 5145 98 4927 99 4710 100 4560 101 4382 102 4217 103 3875 104 3830 105 3658 106 3436 107 3298 108 3300 109 3128 110 2859 111 2888 112 2687 113 2677 114 2587 115 2547 116 2486 117 2465 118 2432 119 2442 120 2260 121 2174 122 2052 123 1994 124 1964 125 1829 126 1768 127 1760 128 1669 129 1671 130 1689 131 1563 132 1512 133 1497 134 1457 135 1532 136 1399 137 1366 138 1348 139 1410 140 1366 141 1310 142 1284 143 1362 144 1357 145 1356 146 1330 147 1321 148 1329 149 1312 150 1344 151 1290 152 1337 153 1318 154 1341 155 1304 156 1270 157 1275 158 1268 159 1282 160 1235 161 1165 162 1204 163 1177 164 1160 165 1202 166 1231 167 1118 168 1085 169 1079 170 1081 171 1022 172 1012 173 961 174 961 175 935 176 893 177 867 178 874 179 850 180 856 181 918 182 863 183 817 184 871 185 851 186 792 187 830 188 793 189 756 190 811 191 779 192 715 193 787 194 742 195 772 196 726 197 725 198 810 199 760 200 770 201 683 202 727 203 689 204 694 205 617 206 667 207 612 208 625 209 590 210 590 211 614 212 613 213 626 214 602 215 567 216 629 217 580 218 554 219 532 220 560 221 505 222 564 223 550 224 503 225 571 226 547 227 542 228 471 229 500 230 502 231 488 232 483 233 425 234 474 235 490 236 441 237 430 238 462 239 430 240 410 241 459 242 449 243 427 244 418 245 422 246 419 247 354 248 401 249 367 250 186348