#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01185/HGDP01185.cram --algo AlignmentStat HGDP/HGDP01185/QCmetrics/HGDP01185.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	446898298	446898298	1.000000	0	446672315	0.999494	66725726241	416739505	62598811928	61470689547	0.000000	0.004568	0.003789	0.000230	151.000000	445259086	0.996836	0	0.499920	0.021724	0.000001	
SECOND_OF_PAIR	446898298	446898298	1.000000	0	445289216	0.996399	65436581984	414479866	61503282635	58259029823	0.000000	0.009447	0.008621	0.000219	151.000000	445259086	0.999932	0	0.499516	0.024113	0.000305	
PAIR	893796596	893796596	1.000000	0	891961531	0.997947	132162308225	831219371	124102094563	119729719370	0.000000	0.006983	0.006183	0.000224	151.000000	890518172	0.998382	0	0.499719	0.022917	0.000153