#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01190/HGDP01190.cram --algo AlignmentStat HGDP/HGDP01190/QCmetrics/HGDP01190.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	392170262	392170262	1.000000	0	391618159	0.998592	58248311834	364726531	54474180402	52460755506	0.000000	0.005361	0.004637	0.000218	151.000000	388976955	0.993256	0	0.492299	0.031780	0.000235	
SECOND_OF_PAIR	392170262	392170262	1.000000	0	389007817	0.991936	54436581222	359401060	50609938451	47606033109	0.000000	0.008716	0.007887	0.000214	151.000000	388976955	0.999921	0	0.492997	0.032425	0.000223	
PAIR	784340524	784340524	1.000000	0	780625976	0.995264	112684893056	724127591	105084118853	100066788615	0.000000	0.006982	0.006202	0.000216	151.000000	777953910	0.996577	0	0.492647	0.032102	0.000229