#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01192/HGDP01192.cram --algo AlignmentStat HGDP/HGDP01192/QCmetrics/HGDP01192.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	356131557	356131557	1.000000	0	355527814	0.998305	52849922473	331499226	49477705376	47423786976	0.000000	0.005677	0.004992	0.000210	151.000000	352642655	0.991885	0	0.491759	0.032695	0.000109	
SECOND_OF_PAIR	356131557	356131557	1.000000	0	352672681	0.990288	51308434356	326270614	47727663647	44241392736	0.000000	0.015940	0.015058	0.000209	151.000000	352642655	0.999915	0	0.492006	0.033505	0.000102	
PAIR	712263114	712263114	1.000000	0	708200495	0.994296	104158356829	657769840	97205369023	91665179712	0.000000	0.010732	0.009934	0.000210	151.000000	705285310	0.995884	0	0.491882	0.033098	0.000106