#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01193/HGDP01193.cram --algo AlignmentStat HGDP/HGDP01193/QCmetrics/HGDP01193.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	443130777	443130777	1.000000	0	442839417	0.999342	66140601288	412746180	61962211263	60745771884	0.000000	0.004861	0.004082	0.000226	151.000000	441865927	0.997802	0	0.499973	0.020537	0.000002	
SECOND_OF_PAIR	443130777	443130777	1.000000	0	441898023	0.997218	65062353225	411057287	61068947664	58136788997	0.000000	0.008943	0.008114	0.000217	151.000000	441865927	0.999927	0	0.499485	0.023094	0.000449	
PAIR	886261554	886261554	1.000000	0	884737440	0.998280	131202954513	823803467	123031158927	118882560881	0.000000	0.006885	0.006083	0.000222	151.000000	883731854	0.998863	0	0.499730	0.021814	0.000225