#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01196/HGDP01196.cram --algo AlignmentStat HGDP/HGDP01196/QCmetrics/HGDP01196.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	448566039	448566039	1.000000	0	448407944	0.999648	67087593684	422478117	63496033646	62411819783	0.000000	0.004343	0.003762	0.000217	151.000000	447028828	0.996924	0	0.499974	0.017538	0.000001	
SECOND_OF_PAIR	448566039	448566039	1.000000	0	447058151	0.996638	65901782512	420279175	62468126466	59214515510	0.000000	0.009483	0.008850	0.000208	151.000000	447028828	0.999934	0	0.499557	0.018882	0.000131	
PAIR	897132078	897132078	1.000000	0	895466095	0.998143	132989376196	842757292	125964160112	121626335293	0.000000	0.006890	0.006285	0.000212	151.000000	894057656	0.998427	0	0.499765	0.018209	0.000066