#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01197/HGDP01197.cram --algo AlignmentStat HGDP/HGDP01197/QCmetrics/HGDP01197.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	399544488	399544488	1.000000	0	399402914	0.999646	59719493533	375400221	56399306964	55315812574	0.000000	0.004721	0.004101	0.000217	151.000000	398099469	0.996737	0	0.499979	0.018407	0.000001	
SECOND_OF_PAIR	399544488	399544488	1.000000	0	398125814	0.996449	58519961168	373318216	55366842398	52096217247	0.000000	0.010613	0.009957	0.000206	151.000000	398099469	0.999934	0	0.499568	0.019953	0.000142	
PAIR	799088976	799088976	1.000000	0	797528728	0.998047	118239454701	748718437	111766149362	107412029821	0.000000	0.007637	0.007002	0.000211	151.000000	796198938	0.998333	0	0.499774	0.019179	0.000071