#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01200/HGDP01200.cram --algo AlignmentStat HGDP/HGDP01200/QCmetrics/HGDP01200.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	398493079	398493079	1.000000	0	398261087	0.999418	59389510195	372276185	55694477421	53697890312	0.000000	0.005350	0.004668	0.000239	151.000000	395547009	0.993185	0	0.498263	0.021112	0.000251	
SECOND_OF_PAIR	398493079	398493079	1.000000	0	395574321	0.992676	57113128919	369037969	53544893035	49561100474	0.000000	0.010427	0.009759	0.000242	151.000000	395547009	0.999931	0	0.498216	0.022300	0.000237	
PAIR	796986158	796986158	1.000000	0	793835408	0.996047	116502639114	741314154	109239370456	103258990786	0.000000	0.007839	0.007163	0.000240	151.000000	791094018	0.996547	0	0.498239	0.021704	0.000244