#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01201/HGDP01201.cram --algo AlignmentStat HGDP/HGDP01201/QCmetrics/HGDP01201.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	355935171	355935171	1.000000	0	355606618	0.999077	53107433350	334498329	50110562679	48313824296	0.000000	0.006078	0.005467	0.000238	151.000000	354359731	0.996494	0	0.498749	0.018986	0.000668	
SECOND_OF_PAIR	355935171	355935171	1.000000	0	354394151	0.995671	52345407463	333038844	49388151330	46331273754	0.000000	0.009405	0.008799	0.000237	151.000000	354359731	0.999903	0	0.498611	0.019983	0.000631	
PAIR	711870342	711870342	1.000000	0	710000769	0.997374	105452840813	667537173	99498714009	94645098050	0.000000	0.007730	0.007121	0.000238	151.000000	708719462	0.998195	0	0.498680	0.019484	0.000649