#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01202/HGDP01202.cram --algo AlignmentStat HGDP/HGDP01202/QCmetrics/HGDP01202.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	382559956	382559956	1.000000	0	381947791	0.998400	56954816531	354339582	53064350149	50706319287	0.000000	0.005874	0.005085	0.000241	151.000000	378108930	0.989949	0	0.496481	0.024872	0.001232	
SECOND_OF_PAIR	382559956	382559956	1.000000	0	378151428	0.988476	55666615439	350274510	51868986054	48390959461	0.000000	0.009029	0.008241	0.000251	151.000000	378108930	0.999888	0	0.496903	0.025757	0.001171	
PAIR	765119912	765119912	1.000000	0	760099219	0.993438	112621431970	704614092	104933336203	99097278748	0.000000	0.007433	0.006645	0.000246	151.000000	756217860	0.994894	0	0.496691	0.025313	0.001201