#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01205/HGDP01205.cram --algo AlignmentStat HGDP/HGDP01205/QCmetrics/HGDP01205.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	427561733	427561733	1.000000	0	426947077	0.998562	63326875520	399155328	59516271082	57469239133	0.000000	0.006229	0.005521	0.000225	151.000000	425293979	0.996128	0	0.499867	0.020069	0.000004	
SECOND_OF_PAIR	427561733	427561733	1.000000	0	425337014	0.994797	61794062263	396709974	58223566830	53713285051	0.000000	0.012065	0.011328	0.000211	151.000000	425293979	0.999899	0	0.499675	0.021257	0.001107	
PAIR	855123466	855123466	1.000000	0	852284091	0.996680	125120937783	795865302	117739837912	111182524184	0.000000	0.009111	0.008392	0.000218	151.000000	850587958	0.998010	0	0.499771	0.020662	0.000556