#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01206/HGDP01206.cram --algo AlignmentStat HGDP/HGDP01206/QCmetrics/HGDP01206.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	462083584	462083584	1.000000	0	461650229	0.999062	68913757650	429695099	64473846325	63075224657	0.000000	0.005328	0.004566	0.000221	151.000000	460059610	0.996554	0	0.499928	0.020520	0.000002	
SECOND_OF_PAIR	462083584	462083584	1.000000	0	460091246	0.995688	67404311484	427285561	63226127483	59447965842	0.000000	0.010350	0.009534	0.000210	151.000000	460059610	0.999931	0	0.499610	0.022075	0.000716	
PAIR	924167168	924167168	1.000000	0	921741475	0.997375	136318069134	856980660	127699973808	122523190499	0.000000	0.007811	0.007025	0.000216	151.000000	920119220	0.998240	0	0.499769	0.021296	0.000359