#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01207/HGDP01207.cram --algo AlignmentStat HGDP/HGDP01207/QCmetrics/HGDP01207.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	394377201	394377201	1.000000	0	393650449	0.998157	58749388970	367297609	55075263309	53606376979	0.000000	0.005070	0.004336	0.000219	151.000000	391943538	0.995664	0	0.499880	0.019919	0.000005	
SECOND_OF_PAIR	394377201	394377201	1.000000	0	391988530	0.993943	57328512956	364867495	53844823230	50015346308	0.000000	0.010867	0.010098	0.000209	151.000000	391943538	0.999885	0	0.499624	0.021431	0.001442	
PAIR	788754402	788754402	1.000000	0	785638979	0.996050	116077901926	732165104	108920086539	103621723287	0.000000	0.007933	0.007184	0.000214	151.000000	783887076	0.997770	0	0.499752	0.020673	0.000724