#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01208/HGDP01208.cram --algo AlignmentStat HGDP/HGDP01208/QCmetrics/HGDP01208.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	428680911	428680911	1.000000	0	428291391	0.999091	64025071519	399984346	60053585494	58742947258	0.000000	0.004761	0.004041	0.000217	151.000000	426182113	0.995075	0	0.499977	0.019900	0.000002	
SECOND_OF_PAIR	428680911	428680911	1.000000	0	426215212	0.994248	62462645125	396976311	58697594320	55076813326	0.000000	0.010341	0.009549	0.000210	151.000000	426182113	0.999922	0	0.499338	0.021857	0.000626	
PAIR	857361822	857361822	1.000000	0	854506603	0.996670	126487716644	796960657	118751179814	113819760584	0.000000	0.007517	0.006763	0.000214	151.000000	852364226	0.997493	0	0.499659	0.020877	0.000314