#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01209/HGDP01209.cram --algo AlignmentStat HGDP/HGDP01209/QCmetrics/HGDP01209.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	727358579	727358579	1.000000	0	726912617	0.999387	108336690722	675317918	101217473191	98539169141	0.000000	0.005304	0.004576	0.000216	151.000000	720292508	0.990893	0	0.499909	0.020418	0.000001	
SECOND_OF_PAIR	727358579	727358579	1.000000	0	720350381	0.990365	104248760128	666911350	97657572365	89201506713	1.000000	0.014199	0.013492	0.000205	151.000000	720292508	0.999920	0	0.499575	0.022118	0.000216	
PAIR	1454717158	1454717158	1.000000	0	1447262998	0.994876	212585450850	1342229268	198875045556	187740675854	0.000000	0.009666	0.008954	0.000211	151.000000	1440585016	0.995386	0	0.499743	0.021265	0.000109