#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01219/HGDP01219.cram --algo AlignmentStat HGDP/HGDP01219/QCmetrics/HGDP01219.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	438806506	438806506	1.000000	0	438119717	0.998435	65461763395	411466116	61768458182	60402187552	0.000000	0.004709	0.004066	0.000223	151.000000	435860181	0.994843	0	0.499918	0.019991	0.000003	
SECOND_OF_PAIR	438806506	438806506	1.000000	0	435898676	0.993373	63774420981	408236025	60280499135	56383757544	0.000000	0.010631	0.009953	0.000215	151.000000	435860181	0.999912	0	0.499420	0.022015	0.001288	
PAIR	877613012	877613012	1.000000	0	874018393	0.995904	129236184376	819702141	122048957317	116785945096	0.000000	0.007631	0.006973	0.000219	151.000000	871720362	0.997371	0	0.499670	0.021000	0.000646