#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01220/HGDP01220.cram --algo AlignmentStat HGDP/HGDP01220/QCmetrics/HGDP01220.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	382319311	382319311	1.000000	0	381806043	0.998657	56919158990	357274028	53554266786	52186493988	0.000000	0.005129	0.004429	0.000218	151.000000	380339762	0.996160	0	0.499918	0.019954	0.000003	
SECOND_OF_PAIR	382319311	382319311	1.000000	0	380376967	0.994920	55550980958	355057072	52394552314	48952438034	0.000000	0.010955	0.010236	0.000208	151.000000	380339762	0.999902	0	0.499634	0.022115	0.000922	
PAIR	764638622	764638622	1.000000	0	762183010	0.996789	112470139948	712331100	105948819100	101138932022	0.000000	0.008007	0.007301	0.000213	151.000000	760679524	0.998027	0	0.499776	0.021033	0.000462