#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01221/HGDP01221.cram --algo AlignmentStat HGDP/HGDP01221/QCmetrics/HGDP01221.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	462961167	462961167	1.000000	0	462486155	0.998974	69033259481	435361789	65272010148	63359198969	0.000000	0.005502	0.004906	0.000218	151.000000	460774306	0.996299	0	0.499880	0.018630	0.000002	
SECOND_OF_PAIR	462961167	462961167	1.000000	0	460812597	0.995359	67411278019	432736527	63866868329	59347314812	0.000000	0.010861	0.010225	0.000208	151.000000	460774306	0.999917	0	0.499611	0.020082	0.000732	
PAIR	925922334	925922334	1.000000	0	923298752	0.997167	136444537500	868098316	129138878477	122706513781	0.000000	0.008149	0.007536	0.000213	151.000000	921548612	0.998104	0	0.499746	0.019355	0.000367