#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01227/HGDP01227.cram --algo AlignmentStat HGDP/HGDP01227/QCmetrics/HGDP01227.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	485934703	485934703	1.000000	0	485508959	0.999124	72459116525	454127224	68081499329	66077777073	0.000000	0.005597	0.004939	0.000221	151.000000	483725695	0.996327	0	0.499887	0.019550	0.000002	
SECOND_OF_PAIR	485934703	485934703	1.000000	0	483765826	0.995537	70745617390	451393900	66615382683	61869470948	0.000000	0.010997	0.010287	0.000211	151.000000	483725695	0.999917	0	0.499596	0.021205	0.000566	
PAIR	971869406	971869406	1.000000	0	969274785	0.997330	143204733915	905521124	134696882012	127947248021	0.000000	0.008264	0.007584	0.000216	151.000000	967451390	0.998119	0	0.499742	0.020376	0.000284