#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01229/HGDP01229.cram --algo AlignmentStat HGDP/HGDP01229/QCmetrics/HGDP01229.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	447148993	447148993	1.000000	0	446514362	0.998581	66583477803	418089808	62652926593	61099373970	0.000000	0.005214	0.004520	0.000222	151.000000	444269415	0.994972	0	0.499879	0.019597	0.000004	
SECOND_OF_PAIR	447148993	447148993	1.000000	0	444313457	0.993659	64851425488	414969966	61140699292	56905310566	0.000000	0.011258	0.010538	0.000212	151.000000	444269415	0.999901	0	0.499597	0.021040	0.001019	
PAIR	894297986	894297986	1.000000	0	890827819	0.996120	131434903291	833059774	123793625885	118004684536	0.000000	0.008196	0.007492	0.000217	151.000000	888538830	0.997430	0	0.499739	0.020317	0.000512