#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01231/HGDP01231.cram --algo AlignmentStat HGDP/HGDP01231/QCmetrics/HGDP01231.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	424516828	424516828	1.000000	0	423943277	0.998649	62953703127	399216659	59526637168	57519995574	0.000000	0.005966	0.005430	0.000214	151.000000	422596545	0.996823	0	0.499910	0.016999	0.000003	
SECOND_OF_PAIR	424516828	424516828	1.000000	0	422639370	0.995577	61677324266	397102162	58442973880	54441953722	0.000000	0.010706	0.010121	0.000204	151.000000	422596545	0.999899	0	0.499689	0.018888	0.000991	
PAIR	849033656	849033656	1.000000	0	846582647	0.997113	124631027393	796318821	117969611048	111961949296	0.000000	0.008312	0.007754	0.000209	151.000000	845193090	0.998359	0	0.499800	0.017942	0.000497