#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.autosome-PAR.interval_list -i HGDP/HGDP01231/HGDP01231.cram --algo WgsMetricsAlgo --min_map_qual 0 HGDP/HGDP01231/QCmetrics/HGDP01231.WgsMetrics.autosome.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 2747965384 29.675 10.656 29 4 0 0.24464 0.0014347 0.04071 0.0040207 0.011666 0.30247 0.99862 0.99599 0.99253 0.98446 0.94334 0.78108 0.4748 0.057786 0.010437 0.0066463 0.0048791 0.0038308 0.0031433 0.0026437 0.99748 26 coverage high_quality_coverage_count 0 3787241 1 2197020 2 1769874 3 1642518 4 1614692 5 1658736 6 1730317 7 1839170 8 2010486 9 2265825 10 2633536 11 3177160 12 3995778 13 5238079 14 7141278 15 10013876 16 14269191 17 20362649 18 28710182 19 39639689 20 53314312 21 69628387 22 88024026 23 107630041 24 127292494 25 145645185 26 161323531 27 173055585 28 179970932 29 181636981 30 178051437 31 169608730 32 157211121 33 141857733 34 124723826 35 106983062 36 89567494 37 73277230 38 58665896 39 46006530 40 35399871 41 26740202 42 19902351 43 14622668 44 10649597 45 7715568 46 5604991 47 4100667 48 3050264 49 2327730 50 1829138 51 1489336 52 1252754 53 1087109 54 969020 55 876706 56 807460 57 748083 58 700273 59 655980 60 618193 61 582572 62 551400 63 522580 64 493064 65 465460 66 440166 67 415741 68 393754 69 373218 70 355312 71 336507 72 321360 73 305275 74 290960 75 277740 76 264950 77 252995 78 243039 79 232684 80 222273 81 213334 82 206389 83 197683 84 190030 85 183880 86 177779 87 170716 88 165920 89 161067 90 155750 91 150093 92 146358 93 142379 94 138620 95 135792 96 131468 97 128179 98 124090 99 120217 100 117669 101 113815 102 111163 103 108880 104 105730 105 103152 106 100120 107 97239 108 94813 109 92723 110 90544 111 87771 112 85702 113 83420 114 81512 115 79280 116 77246 117 74804 118 73176 119 71561 120 69975 121 67977 122 66444 123 64854 124 63073 125 61930 126 60430 127 59262 128 58255 129 56769 130 55406 131 54264 132 52945 133 51880 134 51511 135 50063 136 49343 137 49061 138 47957 139 47209 140 46881 141 45534 142 44706 143 44146 144 43184 145 42701 146 41986 147 41291 148 40641 149 39805 150 39525 151 38361 152 37769 153 37297 154 36513 155 35960 156 34829 157 34541 158 33892 159 33569 160 32542 161 31752 162 31655 163 30799 164 30251 165 29853 166 29385 167 28914 168 28634 169 28142 170 27450 171 27003 172 26758 173 25975 174 26096 175 25421 176 25154 177 24639 178 24324 179 23990 180 23514 181 23315 182 22685 183 22558 184 22247 185 21699 186 21406 187 21296 188 20831 189 20463 190 20062 191 20257 192 19617 193 19596 194 19150 195 18512 196 18577 197 18655 198 17905 199 18049 200 17819 201 17777 202 17456 203 16971 204 16908 205 16809 206 16589 207 16229 208 16121 209 15853 210 15427 211 15373 212 15250 213 14880 214 14854 215 14284 216 14499 217 14315 218 13944 219 14004 220 13873 221 13583 222 13522 223 13359 224 13209 225 13147 226 12961 227 12742 228 12905 229 12581 230 12439 231 12189 232 11987 233 11981 234 11779 235 11924 236 11691 237 11439 238 11343 239 11185 240 11097 241 11351 242 10946 243 11032 244 10608 245 10612 246 10539 247 10331 248 10261 249 10216 250 1841415