#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01232/HGDP01232.cram --algo AlignmentStat HGDP/HGDP01232/QCmetrics/HGDP01232.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	446397814	446397814	1.000000	0	445713913	0.998468	66540303010	418280527	62752412307	61363776314	0.000000	0.005286	0.004633	0.000223	151.000000	444007739	0.996172	0	0.499963	0.019517	0.000004	
SECOND_OF_PAIR	446397814	446397814	1.000000	0	444042722	0.994724	65058720885	415743530	61481838919	57684931959	0.000000	0.010484	0.009803	0.000211	151.000000	444007739	0.999921	0	0.499619	0.021470	0.001170	
PAIR	892795628	892795628	1.000000	0	889756635	0.996596	131599023895	834024057	124234251226	119048708273	0.000000	0.007856	0.007192	0.000217	151.000000	888015478	0.998043	0	0.499791	0.020492	0.000587