#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrX.interval_list -i HGDP/HGDP01232/HGDP01232.cram --algo WgsMetricsAlgo --min_map_qual 0 HGDP/HGDP01232/QCmetrics/HGDP01232.WgsMetrics.chrX.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 152114341 32.4 8.1652 32 4 0 0.20493 0.0016884 0.033314 0.0023709 0.00013709 0.24244 0.99921 0.99696 0.99372 0.98823 0.9699 0.88848 0.66736 0.13329 0.011563 0.0042999 0.0027119 0.0018395 0.0013351 0.0010026 0.99827 28 coverage high_quality_coverage_count 0 120098 1 90710 2 83775 3 84129 4 83521 5 87668 6 91619 7 98038 8 103776 9 111613 10 123121 11 139501 12 159482 13 187144 14 226207 15 284616 16 372922 17 500825 18 684792 19 944658 20 1298066 21 1765929 22 2353514 23 3067461 24 3900969 25 4832993 26 5810775 27 6789071 28 7708583 29 8493701 30 9102931 31 9474487 32 9607091 33 9465648 34 9096934 35 8516630 36 7783495 37 6954956 38 6063714 39 5174494 40 4314209 41 3526344 42 2822107 43 2220786 44 1712872 45 1303922 46 974538 47 722579 48 530420 49 387972 50 281694 51 205067 52 152463 53 115063 54 89443 55 71552 56 59211 57 49725 58 43124 59 37514 60 33334 61 30542 62 28002 63 25665 64 24072 65 22536 66 21038 67 19561 68 18916 69 17892 70 17092 71 15961 72 15250 73 14416 74 13598 75 12611 76 11935 77 11139 78 10605 79 10106 80 9397 81 8961 82 8475 83 8135 84 7746 85 7532 86 7063 87 6798 88 6364 89 6247 90 5881 91 5777 92 5450 93 5310 94 5004 95 5094 96 4728 97 4584 98 4411 99 4334 100 4386 101 4237 102 3960 103 3840 104 3640 105 3678 106 3358 107 3237 108 3217 109 2954 110 2862 111 2721 112 2639 113 2511 114 2377 115 2257 116 2086 117 2088 118 1940 119 1894 120 1912 121 1843 122 1755 123 1847 124 1853 125 1693 126 1673 127 1631 128 1622 129 1561 130 1531 131 1504 132 1419 133 1372 134 1371 135 1397 136 1266 137 1280 138 1253 139 1259 140 1226 141 1218 142 1180 143 1036 144 1081 145 1099 146 1084 147 1041 148 984 149 988 150 1034 151 1027 152 930 153 952 154 937 155 989 156 991 157 931 158 949 159 903 160 856 161 877 162 835 163 824 164 786 165 800 166 772 167 747 168 700 169 700 170 745 171 733 172 710 173 685 174 655 175 655 176 670 177 651 178 707 179 652 180 627 181 622 182 577 183 639 184 564 185 588 186 576 187 534 188 511 189 542 190 538 191 465 192 472 193 486 194 449 195 445 196 470 197 455 198 399 199 349 200 382 201 388 202 371 203 340 204 318 205 308 206 307 207 305 208 302 209 267 210 307 211 278 212 281 213 238 214 259 215 216 216 206 217 211 218 207 219 202 220 188 221 201 222 182 223 202 224 175 225 156 226 144 227 139 228 149 229 157 230 138 231 130 232 113 233 108 234 129 235 98 236 101 237 90 238 111 239 85 240 107 241 80 242 105 243 82 244 85 245 78 246 74 247 73 248 80 249 75 250 6617