#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01233/HGDP01233.cram --algo AlignmentStat HGDP/HGDP01233/QCmetrics/HGDP01233.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	444481664	444481664	1.000000	0	443719189	0.998285	66155163923	414290098	62078702534	60600559061	0.000000	0.005165	0.004435	0.000226	151.000000	441850802	0.995789	0	0.499875	0.020855	0.000006	
SECOND_OF_PAIR	444481664	444481664	1.000000	0	441896400	0.994184	64617000404	411619788	60763946899	57023547691	0.000000	0.010237	0.009461	0.000217	151.000000	441850802	0.999897	0	0.499589	0.022832	0.001356	
PAIR	888963328	888963328	1.000000	0	885615589	0.996234	130772164327	825909886	122842649433	117624106752	0.000000	0.007671	0.006921	0.000222	151.000000	883701604	0.997839	0	0.499732	0.021841	0.000681