#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01237/HGDP01237.cram --algo AlignmentStat HGDP/HGDP01237/QCmetrics/HGDP01237.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	484657609	484657609	1.000000	0	484033099	0.998711	72292888514	452527282	67900090416	66405157753	0.000000	0.005325	0.004623	0.000220	151.000000	482171077	0.996153	0	0.499984	0.018977	0.000004	
SECOND_OF_PAIR	484657609	484657609	1.000000	0	482209003	0.994948	70652576395	449739854	66512114583	62355027560	0.000000	0.010678	0.009918	0.000209	151.000000	482171077	0.999921	0	0.499619	0.020460	0.001014	
PAIR	969315218	969315218	1.000000	0	966242102	0.996830	142945464909	902267136	134412204999	128760185313	0.000000	0.007971	0.007243	0.000214	151.000000	964342154	0.998034	0	0.499802	0.019717	0.000509