#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01239/HGDP01239.cram --algo AlignmentStat HGDP/HGDP01239/QCmetrics/HGDP01239.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	421340909	421340909	1.000000	0	420611868	0.998270	62839290914	392632944	58945544264	57638500133	0.000000	0.004806	0.004072	0.000221	151.000000	418574874	0.995157	0	0.499848	0.020311	0.000005	
SECOND_OF_PAIR	421340909	421340909	1.000000	0	418614721	0.993530	61297550306	389743144	57614929613	53987204455	0.000000	0.010453	0.009660	0.000213	151.000000	418574874	0.999905	0	0.499442	0.022054	0.001431	
PAIR	842681818	842681818	1.000000	0	839226589	0.995900	124136841220	782376088	116560473877	111625704588	0.000000	0.007594	0.006834	0.000217	151.000000	837149748	0.997525	0	0.499645	0.021181	0.000718