#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01241/HGDP01241.cram --algo AlignmentStat HGDP/HGDP01241/QCmetrics/HGDP01241.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	406743101	406743101	1.000000	0	406285544	0.998875	60565206907	380095254	56973201938	55504799955	0.000000	0.005183	0.004462	0.000222	151.000000	404481996	0.995561	0	0.499890	0.020203	0.000003	
SECOND_OF_PAIR	406743101	406743101	1.000000	0	404521002	0.994537	59028954670	377456143	55652666075	51804006577	0.000000	0.011510	0.010780	0.000211	151.000000	404481996	0.999904	0	0.499635	0.022191	0.000734	
PAIR	813486202	813486202	1.000000	0	810806546	0.996706	119594161577	757551397	112625868013	107308806532	0.000000	0.008305	0.007584	0.000216	151.000000	808963992	0.997728	0	0.499763	0.021195	0.000368