#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01243/HGDP01243.cram --algo AlignmentStat HGDP/HGDP01243/QCmetrics/HGDP01243.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	383385994	383385994	1.000000	0	383226625	0.999584	57095847479	353789964	52967483375	50946797032	0.000000	0.005427	0.004571	0.000232	151.000000	367719072	0.959534	0	0.492270	0.029237	0.000075	
SECOND_OF_PAIR	383385994	383385994	1.000000	0	367738873	0.959187	53333012933	338393163	49486362648	45128303338	0.000000	0.013004	0.012162	0.000243	151.000000	367719072	0.999946	0	0.496387	0.030887	0.000068	
PAIR	766771988	766771988	1.000000	0	750965498	0.979386	110428860412	692183127	102453846023	96075100370	0.000000	0.009086	0.008237	0.000237	151.000000	735438144	0.979323	0	0.494286	0.030047	0.000072