#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01244/HGDP01244.cram --algo AlignmentStat HGDP/HGDP01244/QCmetrics/HGDP01244.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	355321466	355321466	1.000000	0	355177810	0.999596	53053516083	328407853	49250962935	47156880924	0.000000	0.005213	0.004470	0.000215	151.000000	304720415	0.857938	0	0.492656	0.028637	0.000099	
SECOND_OF_PAIR	355321466	355321466	1.000000	0	304736342	0.857636	43024075638	279441117	40000908276	35720018591	0.000000	0.013296	0.012476	0.000227	151.000000	304720415	0.999948	0	0.496888	0.033198	0.000078	
PAIR	710642932	710642932	1.000000	0	659914152	0.928616	96077591721	607848970	89251871211	82876899515	0.000000	0.008832	0.008058	0.000221	151.000000	609440830	0.923515	0	0.494610	0.030760	0.000089