#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01248/HGDP01248.cram --algo AlignmentStat HGDP/HGDP01248/QCmetrics/HGDP01248.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	499737406	499737406	1.000000	0	499104252	0.998733	74575181804	465576047	69898343082	68332481577	0.000000	0.004881	0.004115	0.000223	151.000000	496456763	0.994696	0	0.499982	0.020875	0.000003	
SECOND_OF_PAIR	499737406	499737406	1.000000	0	496501414	0.993525	72625643920	461861572	68201702823	63674955336	0.000000	0.011017	0.010199	0.000215	151.000000	496456763	0.999910	0	0.499348	0.022617	0.000941	
PAIR	999474812	999474812	1.000000	0	995605666	0.996129	147200825724	927437619	138100045905	132007436913	0.000000	0.007908	0.007119	0.000219	151.000000	992913526	0.997296	0	0.499666	0.021744	0.000472