#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01249/HGDP01249.cram --algo AlignmentStat HGDP/HGDP01249/QCmetrics/HGDP01249.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	412553999	412553999	1.000000	0	412000447	0.998658	61433935536	386098954	57883534979	56411900424	0.000000	0.005117	0.004408	0.000220	151.000000	410642816	0.996705	0	0.499827	0.019652	0.000004	
SECOND_OF_PAIR	412553999	412553999	1.000000	0	410681766	0.995462	60113332764	383985596	56769746936	53306809201	0.000000	0.010280	0.009550	0.000210	151.000000	410642816	0.999905	0	0.499695	0.021611	0.000929	
PAIR	825107998	825107998	1.000000	0	822682213	0.997060	121547268300	770084550	114653281915	109718709625	0.000000	0.007670	0.006954	0.000215	151.000000	821285632	0.998302	0	0.499761	0.020630	0.000466