#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01251/HGDP01251.cram --algo AlignmentStat HGDP/HGDP01251/QCmetrics/HGDP01251.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	485231589	485231589	1.000000	0	484815670	0.999143	72364927040	455057038	68232308674	66228688500	0.000000	0.005539	0.004916	0.000221	151.000000	483083367	0.996427	0	0.499878	0.019430	0.000002	
SECOND_OF_PAIR	485231589	485231589	1.000000	0	483122452	0.995653	70744469631	452412847	66839257468	62205024545	0.000000	0.010690	0.010027	0.000211	151.000000	483083367	0.999919	0	0.499567	0.020754	0.000578	
PAIR	970463178	970463178	1.000000	0	967938122	0.997398	143109396671	907469885	135071566142	128433713045	0.000000	0.008085	0.007445	0.000216	151.000000	966166734	0.998170	0	0.499723	0.020091	0.000290