#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta --interval /lustre8/home/ncbn-pg/data/resource/picard-interval-list/GRCh38.chrX.interval_list -i HGDP/HGDP01251/HGDP01251.cram --algo WgsMetricsAlgo --min_map_qual 0 HGDP/HGDP01251/QCmetrics/HGDP01251.WgsMetrics.chrX.txt GENOME_TERRITORY MEAN_COVERAGE SD_COVERAGE MEDIAN_COVERAGE MAD_COVERAGE PCT_EXC_MAPQ PCT_EXC_DUPE PCT_EXC_UNPAIRED PCT_EXC_BASEQ PCT_EXC_OVERLAP PCT_EXC_CAPPED PCT_EXC_TOTAL PCT_1X PCT_5X PCT_10X PCT_15X PCT_20X PCT_25X PCT_30X PCT_40X PCT_50X PCT_60X PCT_70X PCT_80X PCT_90X PCT_100X HET_SNP_SENSITIVITY HET_SNP_Q 152114341 29.717 8.8027 29 4 0 0.31464 0.0015566 0.034005 0.0012286 0.00024579 0.35167 0.99923 0.99736 0.99474 0.98785 0.94804 0.78575 0.47847 0.061378 0.0125 0.0078309 0.0052877 0.0036158 0.0024913 0.0017204 0.99843 28 coverage high_quality_coverage_count 0 116940 1 80560 2 70527 3 67507 4 66308 5 65846 6 70498 7 76741 8 86871 9 98357 10 117816 11 143331 12 183954 13 250479 14 352808 15 510451 16 744113 17 1083413 18 1552981 19 2164528 20 2930271 21 3844083 22 4872841 23 5972378 24 7067616 25 8082379 26 8959203 27 9614888 28 10001216 29 10082926 30 9871511 31 9389375 32 8700710 33 7837261 34 6894194 35 5914873 36 4959817 37 4057093 38 3258595 39 2562593 40 1977652 41 1503515 42 1129762 43 838262 44 616345 45 451948 46 333209 47 249147 48 188124 49 147129 50 116966 51 96492 52 83632 53 73236 54 66161 55 61989 56 57443 57 54067 58 51331 59 48893 60 46717 61 45132 62 42546 63 40650 64 39014 65 37436 66 36068 67 34469 68 32945 69 31877 70 30742 71 29633 72 28041 73 26680 74 25632 75 24307 76 23711 77 22797 78 21673 79 21098 80 20320 81 19472 82 18597 83 17798 84 17496 85 16781 86 16097 87 15389 88 14705 89 14402 90 13908 91 13251 92 12812 93 12454 94 12093 95 11496 96 10956 97 10442 98 10162 99 9690 100 9167 101 8777 102 8284 103 7977 104 7713 105 7285 106 6866 107 6726 108 6308 109 6195 110 5922 111 5863 112 5649 113 5431 114 5207 115 4997 116 4809 117 4768 118 4455 119 4326 120 4070 121 3910 122 3659 123 3466 124 3479 125 3361 126 3091 127 3064 128 2937 129 2723 130 2601 131 2481 132 2329 133 2274 134 2134 135 2142 136 2062 137 1949 138 1831 139 1858 140 1772 141 1686 142 1753 143 1705 144 1663 145 1629 146 1601 147 1470 148 1424 149 1399 150 1381 151 1373 152 1299 153 1164 154 1153 155 1163 156 1110 157 1075 158 1048 159 923 160 972 161 927 162 944 163 844 164 838 165 853 166 789 167 821 168 803 169 770 170 766 171 781 172 717 173 686 174 716 175 717 176 625 177 680 178 653 179 602 180 620 181 580 182 569 183 557 184 521 185 527 186 534 187 526 188 497 189 499 190 485 191 442 192 445 193 453 194 440 195 432 196 423 197 447 198 402 199 377 200 396 201 373 202 353 203 349 204 364 205 350 206 333 207 355 208 376 209 321 210 302 211 283 212 291 213 295 214 271 215 326 216 263 217 294 218 286 219 252 220 276 221 265 222 256 223 261 224 270 225 242 226 229 227 232 228 177 229 201 230 194 231 199 232 168 233 179 234 195 235 195 236 213 237 175 238 188 239 196 240 179 241 200 242 198 243 195 244 176 245 191 246 188 247 183 248 181 249 172 250 13873