#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01254/HGDP01254.cram --algo AlignmentStat HGDP/HGDP01254/QCmetrics/HGDP01254.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	437425542	437425542	1.000000	0	437133541	0.999332	65463722955	417696820	62762196257	61305655654	0.000000	0.004589	0.004139	0.000210	151.000000	435626118	0.996552	0	0.499985	0.015261	0.000002	
SECOND_OF_PAIR	437425542	437425542	1.000000	0	435656934	0.995957	64358653512	415459973	61744726578	58297124990	0.000000	0.009173	0.008695	0.000203	151.000000	435626118	0.999929	0	0.499554	0.016444	0.000344	
PAIR	874851084	874851084	1.000000	0	872790475	0.997645	129822376467	833156793	124506922835	119602780644	0.000000	0.006862	0.006398	0.000207	151.000000	871252236	0.998238	0	0.499770	0.015852	0.000173