#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01255/HGDP01255.cram --algo AlignmentStat HGDP/HGDP01255/QCmetrics/HGDP01255.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	415733176	415733176	1.000000	0	414017156	0.995872	61346117358	386642807	57507745639	54938694474	0.000000	0.023434	0.022738	0.000211	151.000000	411467373	0.993841	0	0.499039	0.017927	0.000048	
SECOND_OF_PAIR	415733176	415733176	1.000000	0	411493685	0.989802	54342426193	383787200	50957886562	47979775946	0.000000	0.009893	0.009282	0.000204	151.000000	411467373	0.999936	0	0.499013	0.018489	0.000047	
PAIR	831466352	831466352	1.000000	0	825510841	0.992837	115688543551	770430007	108465632201	102918470420	0.000000	0.017074	0.016417	0.000208	151.000000	822934746	0.996879	0	0.499026	0.018207	0.000048