#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01256/HGDP01256.cram --algo AlignmentStat HGDP/HGDP01256/QCmetrics/HGDP01256.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	306952620	306952620	1.000000	0	306746541	0.999329	45698849945	287432170	42978220715	40884014354	0.000000	0.005742	0.005068	0.000218	151.000000	305801073	0.996918	0	0.498858	0.018850	0.000073	
SECOND_OF_PAIR	306952620	306952620	1.000000	0	305818899	0.996307	44736984616	286130447	42059894459	38661006832	0.000000	0.009941	0.009287	0.000218	151.000000	305801073	0.999942	0	0.499042	0.019492	0.000070	
PAIR	613905240	613905240	1.000000	0	612565440	0.997818	90435834561	573562617	85038115174	79545021186	0.000000	0.007819	0.007155	0.000218	151.000000	611602146	0.998427	0	0.498950	0.019171	0.000071