#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01258/HGDP01258.cram --algo AlignmentStat HGDP/HGDP01258/QCmetrics/HGDP01258.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	369068495	369068495	1.000000	0	368915455	0.999585	55226147301	350655635	52680484944	51360990826	0.000000	0.004764	0.004228	0.000208	151.000000	367102515	0.995086	0	0.500027	0.015927	0.000001	
SECOND_OF_PAIR	369068495	369068495	1.000000	0	367123125	0.994729	53902469716	348059683	51465906305	47921527906	0.000000	0.010968	0.010402	0.000200	151.000000	367102515	0.999944	0	0.499479	0.017211	0.000262	
PAIR	738136990	738136990	1.000000	0	736038580	0.997157	109128617017	698715318	104146391249	99282518732	0.000000	0.007828	0.007279	0.000204	151.000000	734205030	0.997509	0	0.499754	0.016567	0.000132