#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01259/HGDP01259.cram --algo AlignmentStat HGDP/HGDP01259/QCmetrics/HGDP01259.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	422725951	422725951	1.000000	0	422397519	0.999223	63087248380	393947972	59154180016	57560775751	0.000000	0.005324	0.004495	0.000227	151.000000	420149437	0.994678	0	0.499990	0.022090	0.000003	
SECOND_OF_PAIR	422725951	422725951	1.000000	0	420184445	0.993988	61568280819	390834155	57820320127	53840191819	0.000000	0.011072	0.010223	0.000217	151.000000	420149437	0.999917	0	0.499384	0.023147	0.000544	
PAIR	845451902	845451902	1.000000	0	842581964	0.996605	124655529199	784782127	116974500143	111400967570	0.000000	0.008163	0.007326	0.000222	151.000000	840298874	0.997290	0	0.499688	0.022617	0.000274