#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01262/HGDP01262.cram --algo AlignmentStat HGDP/HGDP01262/QCmetrics/HGDP01262.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	406514553	406514553	1.000000	0	406342509	0.999577	60779265406	383415966	57586853150	56163516651	0.000000	0.005013	0.004358	0.000216	151.000000	404380487	0.995172	0	0.499968	0.018113	0.000001	
SECOND_OF_PAIR	406514553	406514553	1.000000	0	404404158	0.994809	59332088312	380635409	56293344531	52430017270	0.000000	0.011225	0.010545	0.000207	151.000000	404380487	0.999941	0	0.499484	0.019232	0.000240	
PAIR	813029106	813029106	1.000000	0	810746667	0.997193	120111353718	764051375	113880197681	108593533921	0.000000	0.008081	0.007416	0.000211	151.000000	808760974	0.997551	0	0.499727	0.018671	0.000121