#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01263/HGDP01263.cram --algo AlignmentStat HGDP/HGDP01263/QCmetrics/HGDP01263.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	443919342	443919342	1.000000	0	443779055	0.999684	66500300154	425567356	63944612439	62534461918	0.000000	0.004255	0.003849	0.000200	151.000000	441865298	0.995688	0	0.499960	0.012735	0.000001	
SECOND_OF_PAIR	443919342	443919342	1.000000	0	441887848	0.995424	65259884848	422933718	62787310078	59234736488	0.000000	0.009031	0.008587	0.000194	151.000000	441865298	0.999949	0	0.499571	0.013766	0.000172	
PAIR	887838684	887838684	1.000000	0	885666903	0.997554	131760185002	848501074	126731922517	121769198406	0.000000	0.006620	0.006196	0.000197	151.000000	883730596	0.997814	0	0.499766	0.013249	0.000086