#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01264/HGDP01264.cram --algo AlignmentStat HGDP/HGDP01264/QCmetrics/HGDP01264.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	380035655	380035655	1.000000	0	379907252	0.999662	56750112971	355271138	53342273552	51910817193	0.000000	0.005280	0.004506	0.000224	151.000000	378248547	0.995634	0	0.500037	0.020817	0.000001	
SECOND_OF_PAIR	380035655	380035655	1.000000	0	378273312	0.995363	55359922866	352805498	52120413458	48440583505	0.000000	0.011323	0.010532	0.000214	151.000000	378248547	0.999935	0	0.499371	0.022117	0.000152	
PAIR	760071310	760071310	1.000000	0	758180564	0.997512	112110035837	708076636	105462687010	100351400698	0.000000	0.008264	0.007484	0.000219	151.000000	756497094	0.997780	0	0.499705	0.021466	0.000076