#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i HGDP/HGDP01265/HGDP01265.cram --algo AlignmentStat HGDP/HGDP01265/QCmetrics/HGDP01265.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	395317834	395317834	1.000000	0	395083692	0.999408	59025041383	368408732	55328435916	53970099624	0.000000	0.005502	0.004694	0.000228	151.000000	393660224	0.996397	0	0.500038	0.021878	0.000002	
SECOND_OF_PAIR	395317834	395317834	1.000000	0	393688633	0.995879	57778242393	366251989	54263509410	50809354213	0.000000	0.010714	0.009874	0.000218	151.000000	393660224	0.999928	0	0.499404	0.023202	0.000393	
PAIR	790635668	790635668	1.000000	0	788772325	0.997643	116803283776	734660721	109591945326	104779453837	0.000000	0.008080	0.007258	0.000223	151.000000	787320448	0.998159	0	0.499721	0.022539	0.000197